Publications

Citing FAIRDOM-SEEK

If you have been using FAIRDOM-SEEK in your research then please cite us. The key FAIRDOM-SEEK publications to cite are:

SEEK: a systems biology data and model management platform. BMC Systems Biology

Wolstencroft, K, Owen, S, Krebs, O, Nguyen, Q, Stanford, NJ, Golebiewski, M, Weidemann, A, Bittkowski, M, An, L, Shockley, D, Snoep, JL, Mueller, W, Goble, C (2015) SEEK: a systems biology data and model management platform. BMC Systems Biology, Issue 9:33, pages 33, 2015. DOI: 10.1186/s12918-015-0174-y

FAIRDOMHub: a repository and collaboration environment for sharing systems biology research. Nucleic Acids Research

Wolstencroft K, Krebs O, Snoep J.L, Stanford N.J, Bacall F, Golebiewski M, Kuzyakiv R, Nguyen Q, Owen S, Soiland-Reyes S, Straszewski J, Van Niekerk D.D, Williams A.R, Malmström L, Rinn B, Müller W, and Goble C (2016) FAIRDOMHub: a repository and collaboration environment for sharing systems biology research. Nucleic Acids Research, 2016, 10.1093/nar/gkw1032. DOI: 10.1093/nar/gkw1032

For all other publications relating to FAIRDOM-SEEK, see:

  • Natalie J Stanford, Katherine Wolstencroft, Martin Golebiewski, Renate Kania, Nick Juty, Christopher Tomlinson, Stuart Owen, Sarah Butcher, Henning Hermjakob, Nicolas Le Novère, Wolfgang Mueller, Jacky Snoep, Carole Goble (2015) The evolution of standards and data management practices in systems biology. Molecular Systems Biology, Issue 11:12, 2015. DOI:10.15252/msb.20156053
  • Katherine Wolstencroft, Stuart Owen, Olga Krebs, Wolfgang Mueller, Quyen Nguyen, Jacky L. Snoep, Carole Goble (2013) Semantic Data and Models Sharing in Systems Biology: The Just Enough Results Model and the SEEK Platform. The Semantic Web – ISWC 2013 Lecture Notes in Computer Science Volume 8219, 2013, pp 212-227. DOI:10.1007/978-3-642-41338-4_14
  • Sansone S-A, Rocca-Serra P, Field D … Goble C, … Wolstencroft K (2012) et al Toward interoperable bioscience data Nature Genetics 44: 121–126 DOI:10.1038/ng.1054
  • Goble CA, De Roure D and Bechhofer S, Accelerating Scientists’ Knowledge Turns, Proc The 3rd International Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management (ICK3) Paris, LNCS Springer Verlag. DOI:10.1007/978-3-642-37186-8_1
  • Goble CA, Wolstencroft K, Bechhofer S The Semantic Web and Interoperability in Systems Biology iEncyclopedia of Systems Biology, Springer Verlag
  • Bechhofer S, Buchan I, De Roure D, Missier P, Ainsworth J, Bhagat J, Couch P, Cruickshank D, Delderfield M, Dunlop I, Gamble M, Michaelides D, Owen S, Newman D, Sufi S, Goble C (2011) Why Linked Data is Not Enough for Scientists, Future Generation Computer Systems. Available online 19 August 2011, ISSN 0167-739X, DOI:10.1016/j.future.2011.08.004
  • Waltemath, D., Adams, R., Bergmann, F.T., Hucka, M., Kolpakov, F., Miller, A.K., Moraru, I.I., Nickerson, D., Sahle, S., Snoep, J.L. and Le Novère, N. (2011) Reproducible computational biology experiments with SED-ML—The Simulation Experiment Description Markup Language BMC Systems Biology 5:198 DOI:10.1186/1752-0509-5-198